miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST001161
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTCCATCCCAAAATAAGTGA

miRNA*
ACTTTTTCTGGGACAGAGGAA

mismatches: 4
bulges: 0

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pre-miRNA
ATTAAGTACTCCCTCCATCCCAAAATAAGTGACCACTTTGGATTCAAAATTTGTCCCAAAATAAGTGACCACTTTAGAGTAGTACTAGTCTCATCAACTA
CTTCTAATTCAAATTTCTTACAATCTTATCCCCAACTACCCTCTCACTCCCAAACAACACTCATTTAATAGGGGCCATCTAGGTCATTTACCTCCCCCTC
ATAATTTGGCCATAAGTAGTAAAGCGGTCACTTTTTCTGGGACAGAGGAAGTAAAAGT


dot-bracket secondary structure
......((((.((((..(((((.((.((((((((.((((((((.......((((....((((...(((.....((((((((((.............))))
).))))).))).))))...))))....))))...(((((..........(((((..........(((..(((((......((((.....)))).))))).
.))))))))......))))))))).)))))))).)).)))))..)))).)))).....



SIMILARITIES
miRBase no hits

PMRD hpr-miR1120: 0.00001

microPC miR1439: 0.00001
UniProt no hits

RFAM MIR1122: 0.0000003
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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